Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1850637..1850782 | Replicon | chromosome |
| Accession | NZ_CP084860 | ||
| Organism | Klebsiella pneumoniae strain SB1067 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1850673..1850775 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1850637..1850782 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM10_RS09100 | 1845767..1847827 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LGM10_RS09105 | 1847831..1848490 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM10_RS09110 | 1848569..1848799 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM10_RS09115 | 1848912..1849286 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM10_RS09120 | 1849290..1850159 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LGM10_RS09125 | 1850176..1850514 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1850637..1850782 | - | 146 | - | - | Antitoxin |
| - | 1850673..1850775 | + | 103 | - | - | Toxin |
| LGM10_RS09130 | 1851150..1851293 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LGM10_RS09135 | 1851398..1852366 | - | 969 | WP_074195444.1 | VirK/YbjX family protein | - |
| LGM10_RS09140 | 1852523..1853176 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LGM10_RS09145 | 1853173..1853364 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM10_RS09150 | 1853462..1853701 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM10_RS09155 | 1853817..1855250 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219616 NZ_CP084860:1850673-1850775 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219616 NZ_CP084860:c1850782-1850637 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
