Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1971167..1971312 | Replicon | chromosome |
| Accession | NZ_CP084859 | ||
| Organism | Klebsiella pneumoniae strain SB1139 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1971203..1971305 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1971167..1971312 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM11_RS09585 | 1966297..1968357 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LGM11_RS09590 | 1968361..1969020 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM11_RS09595 | 1969099..1969329 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM11_RS09600 | 1969442..1969816 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM11_RS09605 | 1969820..1970689 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LGM11_RS09610 | 1970706..1971044 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1971167..1971312 | - | 146 | - | - | Antitoxin |
| - | 1971203..1971305 | + | 103 | - | - | Toxin |
| LGM11_RS09615 | 1971680..1971823 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LGM11_RS09620 | 1971928..1972896 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LGM11_RS09625 | 1973053..1973706 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LGM11_RS09630 | 1973703..1973894 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM11_RS09635 | 1973992..1974231 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM11_RS09640 | 1974347..1975780 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219597 NZ_CP084859:1971203-1971305 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219597 NZ_CP084859:c1971312-1971167 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
