Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1994931..1995076 | Replicon | chromosome |
| Accession | NZ_CP084856 | ||
| Organism | Klebsiella pneumoniae strain SB1170 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1994967..1995069 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1994931..1995076 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM12_RS09740 | 1990061..1992121 | + | 2061 | WP_032419805.1 | oligopeptidase B | - |
| LGM12_RS09745 | 1992125..1992784 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM12_RS09750 | 1992863..1993093 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM12_RS09755 | 1993206..1993580 | + | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| LGM12_RS09760 | 1993584..1994453 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LGM12_RS09765 | 1994470..1994808 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1994931..1995076 | - | 146 | - | - | Antitoxin |
| - | 1994967..1995069 | + | 103 | - | - | Toxin |
| LGM12_RS09770 | 1995444..1995587 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LGM12_RS09775 | 1995692..1996660 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LGM12_RS09780 | 1996817..1997470 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| LGM12_RS09785 | 1997467..1997658 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM12_RS09790 | 1997756..1997995 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM12_RS09795 | 1998111..1999544 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1920840..2012473 | 91633 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219577 NZ_CP084856:1994967-1995069 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219577 NZ_CP084856:c1995076-1994931 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
