Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2032969..2033114 | Replicon | chromosome |
| Accession | NZ_CP084852 | ||
| Organism | Klebsiella pneumoniae strain SB2390 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2033005..2033107 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2032969..2033114 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM13_RS10030 | 2028099..2030159 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LGM13_RS10035 | 2030163..2030822 | - | 660 | WP_004180433.1 | exodeoxyribonuclease X | - |
| LGM13_RS10040 | 2030901..2031131 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM13_RS10045 | 2031244..2031618 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM13_RS10050 | 2031622..2032491 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| LGM13_RS10055 | 2032508..2032846 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2032969..2033114 | - | 146 | - | - | Antitoxin |
| - | 2033005..2033107 | + | 103 | - | - | Toxin |
| LGM13_RS10060 | 2033483..2033626 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LGM13_RS10065 | 2033731..2034699 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LGM13_RS10070 | 2034856..2035509 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LGM13_RS10075 | 2035506..2035697 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM13_RS10080 | 2035795..2036034 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM13_RS10085 | 2036150..2037583 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219558 NZ_CP084852:2033005-2033107 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219558 NZ_CP084852:c2033114-2032969 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
