Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1998750..1998895 | Replicon | chromosome |
| Accession | NZ_CP084843 | ||
| Organism | Klebsiella pneumoniae strain SB611 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1998786..1998888 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1998750..1998895 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM15_RS09900 | 1993880..1995940 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LGM15_RS09905 | 1995944..1996603 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM15_RS09910 | 1996682..1996912 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM15_RS09915 | 1997025..1997399 | + | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| LGM15_RS09920 | 1997403..1998272 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LGM15_RS09925 | 1998289..1998627 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1998750..1998895 | - | 146 | - | - | Antitoxin |
| - | 1998786..1998888 | + | 103 | - | - | Toxin |
| LGM15_RS09930 | 1999263..1999406 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LGM15_RS09935 | 1999511..2000479 | - | 969 | WP_074421963.1 | VirK/YbjX family protein | - |
| LGM15_RS09940 | 2000636..2001289 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| LGM15_RS09945 | 2001286..2001477 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM15_RS09950 | 2001575..2001814 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM15_RS09955 | 2001930..2003363 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219538 NZ_CP084843:1998786-1998888 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219538 NZ_CP084843:c1998895-1998750 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
