Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1934148..1934293 | Replicon | chromosome |
| Accession | NZ_CP084830 | ||
| Organism | Klebsiella pneumoniae strain SB612 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1934184..1934286 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1934148..1934293 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM16_RS09480 (LGM16_09480) | 1929278..1931338 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LGM16_RS09485 (LGM16_09485) | 1931342..1932001 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM16_RS09490 (LGM16_09490) | 1932080..1932310 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM16_RS09495 (LGM16_09495) | 1932423..1932797 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM16_RS09500 (LGM16_09500) | 1932801..1933670 | + | 870 | WP_023316211.1 | copper homeostasis membrane protein CopD | - |
| LGM16_RS09505 (LGM16_09505) | 1933687..1934025 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1934148..1934293 | - | 146 | - | - | Antitoxin |
| - | 1934184..1934286 | + | 103 | - | - | Toxin |
| LGM16_RS09510 (LGM16_09510) | 1934661..1934804 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LGM16_RS09515 (LGM16_09515) | 1934909..1935877 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LGM16_RS09520 (LGM16_09520) | 1936034..1936687 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| LGM16_RS09525 (LGM16_09525) | 1936684..1936875 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM16_RS09530 (LGM16_09530) | 1936973..1937212 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM16_RS09535 (LGM16_09535) | 1937328..1938761 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219514 NZ_CP084830:1934184-1934286 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219514 NZ_CP084830:c1934293-1934148 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
