Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1838810..1838955 | Replicon | chromosome |
| Accession | NZ_CP084829 | ||
| Organism | Klebsiella pneumoniae strain SB615 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1838846..1838948 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1838810..1838955 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM17_RS08875 | 1833940..1836000 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LGM17_RS08880 | 1836004..1836663 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM17_RS08885 | 1836742..1836972 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM17_RS08890 | 1837085..1837459 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM17_RS08895 | 1837463..1838332 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| LGM17_RS08900 | 1838349..1838687 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1838810..1838955 | - | 146 | - | - | Antitoxin |
| - | 1838846..1838948 | + | 103 | - | - | Toxin |
| LGM17_RS08905 | 1839323..1839466 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LGM17_RS08910 | 1839571..1840539 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LGM17_RS08915 | 1840696..1841349 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| LGM17_RS08920 | 1841346..1841537 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM17_RS08925 | 1841635..1841874 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM17_RS08930 | 1841990..1843423 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219497 NZ_CP084829:1838846-1838948 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219497 NZ_CP084829:c1838955-1838810 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
