Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1970078..1970225 | Replicon | chromosome |
| Accession | NZ_CP084818 | ||
| Organism | Klebsiella quasipneumoniae subsp. quasipneumoniae strain 18A069 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1970119..1970221 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1970078..1970225 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM21_RS09685 | 1965213..1967273 | + | 2061 | WP_032453374.1 | oligopeptidase B | - |
| LGM21_RS09690 | 1967277..1967936 | - | 660 | WP_032453373.1 | exodeoxyribonuclease X | - |
| LGM21_RS09695 | 1968015..1968245 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM21_RS09700 | 1968358..1968732 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| LGM21_RS09705 | 1968736..1969605 | + | 870 | WP_032453371.1 | copper homeostasis membrane protein CopD | - |
| LGM21_RS09710 | 1969622..1969960 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1970078..1970225 | - | 148 | - | - | Antitoxin |
| - | 1970119..1970221 | + | 103 | - | - | Toxin |
| LGM21_RS09715 | 1970600..1970743 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LGM21_RS09720 | 1970847..1971815 | - | 969 | WP_168381031.1 | VirK/YbjX family protein | - |
| LGM21_RS09725 | 1971972..1972625 | + | 654 | WP_032453370.1 | protein-serine/threonine phosphatase | - |
| LGM21_RS09730 | 1972622..1972813 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM21_RS09735 | 1972911..1973150 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM21_RS09740 | 1973266..1974696 | - | 1431 | WP_032453369.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219441 NZ_CP084818:1970119-1970221 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT219441 NZ_CP084818:c1970225-1970078 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
