Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1904683..1904830 | Replicon | chromosome |
| Accession | NZ_CP084803 | ||
| Organism | Klebsiella quasipneumoniae subsp. quasipneumoniae strain SB98 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1904724..1904826 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1904683..1904830 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM23_RS09240 | 1899818..1901878 | + | 2061 | WP_048297811.1 | oligopeptidase B | - |
| LGM23_RS09245 | 1901882..1902541 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| LGM23_RS09250 | 1902620..1902850 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM23_RS09255 | 1902963..1903337 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| LGM23_RS09260 | 1903341..1904210 | + | 870 | WP_044523974.1 | copper homeostasis membrane protein CopD | - |
| LGM23_RS09265 | 1904227..1904565 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1904683..1904830 | - | 148 | - | - | Antitoxin |
| - | 1904724..1904826 | + | 103 | - | - | Toxin |
| LGM23_RS09270 | 1905205..1905348 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LGM23_RS09275 | 1905449..1906417 | - | 969 | WP_168443663.1 | VirK/YbjX family protein | - |
| LGM23_RS09280 | 1906574..1907227 | + | 654 | WP_044523971.1 | protein-serine/threonine phosphatase | - |
| LGM23_RS09285 | 1907224..1907415 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM23_RS09290 | 1907513..1907752 | - | 240 | WP_044523970.1 | YebV family protein | - |
| LGM23_RS09295 | 1907868..1909298 | - | 1431 | WP_136071364.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219406 NZ_CP084803:1904724-1904826 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT219406 NZ_CP084803:c1904830-1904683 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
