Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3250567..3250714 | Replicon | chromosome |
| Accession | NZ_CP084783 | ||
| Organism | Klebsiella quasipneumoniae subsp. similipneumoniae strain 09A323 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3250571..3250673 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3250567..3250714 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM26_RS15790 | 3246065..3247498 | + | 1434 | WP_017900211.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LGM26_RS15795 | 3247615..3247854 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LGM26_RS15800 | 3247952..3248143 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LGM26_RS15805 | 3248140..3248811 | - | 672 | WP_017900212.1 | protein-serine/threonine phosphatase | - |
| LGM26_RS15810 | 3248968..3249936 | + | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| LGM26_RS15815 | 3250040..3250183 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 3250567..3250714 | + | 148 | - | - | Antitoxin |
| - | 3250571..3250673 | - | 103 | - | - | Toxin |
| LGM26_RS15820 | 3250832..3251170 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LGM26_RS15825 | 3251187..3252056 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| LGM26_RS15830 | 3252060..3252434 | - | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| LGM26_RS15835 | 3252547..3252777 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM26_RS15840 | 3252856..3253515 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| LGM26_RS15845 | 3253519..3255579 | - | 2061 | WP_004203388.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219395 NZ_CP084783:c3250673-3250571 [Klebsiella quasipneumoniae subsp. similipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT219395 NZ_CP084783:3250567-3250714 [Klebsiella quasipneumoniae subsp. similipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
