Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1843775..1843922 | Replicon | chromosome |
| Accession | NZ_CP084779 | ||
| Organism | Klebsiella quasipneumoniae subsp. similipneumoniae strain 12A476 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1843816..1843918 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1843775..1843922 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM27_RS08855 | 1838910..1840970 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| LGM27_RS08860 | 1840974..1841633 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| LGM27_RS08865 | 1841712..1841942 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM27_RS08870 | 1842055..1842429 | + | 375 | WP_064149717.1 | CopC domain-containing protein YobA | - |
| LGM27_RS08875 | 1842433..1843302 | + | 870 | WP_064183814.1 | copper homeostasis membrane protein CopD | - |
| LGM27_RS08880 | 1843319..1843657 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1843775..1843922 | - | 148 | - | - | Antitoxin |
| - | 1843816..1843918 | + | 103 | - | - | Toxin |
| LGM27_RS08885 | 1844306..1844449 | - | 144 | WP_064183818.1 | Ecr family regulatory small membrane protein | - |
| LGM27_RS08890 | 1844553..1845521 | - | 969 | WP_064149721.1 | VirK/YbjX family protein | - |
| LGM27_RS08895 | 1845678..1846331 | + | 654 | WP_053810193.1 | protein-serine/threonine phosphatase | - |
| LGM27_RS08900 | 1846328..1846519 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM27_RS08905 | 1846617..1846856 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM27_RS08910 | 1846973..1848406 | - | 1434 | WP_064183816.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219378 NZ_CP084779:1843816-1843918 [Klebsiella quasipneumoniae subsp. similipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT219378 NZ_CP084779:c1843922-1843775 [Klebsiella quasipneumoniae subsp. similipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
