Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1850585..1850732 | Replicon | chromosome |
| Accession | NZ_CP084777 | ||
| Organism | Klebsiella quasipneumoniae subsp. similipneumoniae strain CIP110288 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1850626..1850728 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1850585..1850732 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM28_RS08895 | 1845720..1847780 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| LGM28_RS08900 | 1847784..1848443 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| LGM28_RS08905 | 1848522..1848752 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM28_RS08910 | 1848865..1849239 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| LGM28_RS08915 | 1849243..1850112 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| LGM28_RS08920 | 1850129..1850467 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1850585..1850732 | - | 148 | - | - | Antitoxin |
| - | 1850626..1850728 | + | 103 | - | - | Toxin |
| LGM28_RS08925 | 1851116..1851259 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LGM28_RS08930 | 1851363..1852331 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| LGM28_RS08935 | 1852488..1853141 | + | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| LGM28_RS08940 | 1853138..1853329 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM28_RS08945 | 1853427..1853666 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM28_RS08950 | 1853783..1855216 | - | 1434 | WP_004203381.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219363 NZ_CP084777:1850626-1850728 [Klebsiella quasipneumoniae subsp. similipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT219363 NZ_CP084777:c1850732-1850585 [Klebsiella quasipneumoniae subsp. similipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
