Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1921941..1922088 | Replicon | chromosome |
| Accession | NZ_CP084770 | ||
| Organism | Klebsiella quasipneumoniae subsp. similipneumoniae strain SB610 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1921982..1922084 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1921941..1922088 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM29_RS09290 | 1917076..1919136 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| LGM29_RS09295 | 1919140..1919799 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| LGM29_RS09300 | 1919878..1920108 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM29_RS09305 | 1920221..1920595 | + | 375 | WP_065877427.1 | CopC domain-containing protein YobA | - |
| LGM29_RS09310 | 1920599..1921468 | + | 870 | WP_043520552.1 | copper homeostasis membrane protein CopD | - |
| LGM29_RS09315 | 1921485..1921823 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1921941..1922088 | - | 148 | - | - | Antitoxin |
| - | 1921982..1922084 | + | 103 | - | - | Toxin |
| LGM29_RS09320 | 1922472..1922615 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LGM29_RS09325 | 1922719..1923687 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| LGM29_RS09330 | 1923844..1924497 | + | 654 | WP_182971859.1 | protein-serine/threonine phosphatase | - |
| LGM29_RS09335 | 1924494..1924685 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGM29_RS09340 | 1924783..1925022 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGM29_RS09345 | 1925139..1926572 | - | 1434 | WP_226549626.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219346 NZ_CP084770:1921982-1922084 [Klebsiella quasipneumoniae subsp. similipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT219346 NZ_CP084770:c1922088-1921941 [Klebsiella quasipneumoniae subsp. similipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
