Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1878564..1878708 | Replicon | chromosome |
| Accession | NZ_CP084766 | ||
| Organism | Klebsiella variicola subsp. variicola strain 01A065 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1878600..1878702 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1878564..1878708 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGN95_RS09055 (LGN95_09055) | 1873694..1875754 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| LGN95_RS09060 (LGN95_09060) | 1875758..1876417 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| LGN95_RS09065 (LGN95_09065) | 1876496..1876726 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| LGN95_RS09070 (LGN95_09070) | 1876840..1877214 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| LGN95_RS09075 (LGN95_09075) | 1877218..1878087 | + | 870 | WP_060619401.1 | copper homeostasis membrane protein CopD | - |
| LGN95_RS09080 (LGN95_09080) | 1878104..1878442 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1878564..1878708 | - | 145 | - | - | Antitoxin |
| - | 1878600..1878702 | + | 103 | - | - | Toxin |
| LGN95_RS09085 (LGN95_09085) | 1879087..1879230 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| LGN95_RS09090 (LGN95_09090) | 1879334..1880302 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| LGN95_RS09095 (LGN95_09095) | 1880458..1881111 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| LGN95_RS09100 (LGN95_09100) | 1881108..1881299 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGN95_RS09105 (LGN95_09105) | 1881397..1881636 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGN95_RS09110 (LGN95_09110) | 1881752..1883185 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219313 NZ_CP084766:1878600-1878702 [Klebsiella variicola subsp. variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT219313 NZ_CP084766:c1878708-1878564 [Klebsiella variicola subsp. variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
