Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972629..1972773 | Replicon | chromosome |
| Accession | NZ_CP084765 | ||
| Organism | Klebsiella variicola subsp. variicola strain F2R9T | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972665..1972767 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972629..1972773 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGN93_RS09575 (LGN93_09575) | 1967759..1969819 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| LGN93_RS09580 (LGN93_09580) | 1969823..1970482 | - | 660 | WP_022066251.1 | exodeoxyribonuclease X | - |
| LGN93_RS09585 (LGN93_09585) | 1970561..1970791 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| LGN93_RS09590 (LGN93_09590) | 1970905..1971279 | + | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| LGN93_RS09595 (LGN93_09595) | 1971283..1972152 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| LGN93_RS09600 (LGN93_09600) | 1972169..1972507 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1972629..1972773 | - | 145 | - | - | Antitoxin |
| - | 1972665..1972767 | + | 103 | - | - | Toxin |
| LGN93_RS09605 (LGN93_09605) | 1973152..1973295 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| LGN93_RS09610 (LGN93_09610) | 1973399..1974388 | - | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| LGN93_RS09615 (LGN93_09615) | 1974524..1975177 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| LGN93_RS09620 (LGN93_09620) | 1975174..1975365 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LGN93_RS09625 (LGN93_09625) | 1975463..1975702 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LGN93_RS09630 (LGN93_09630) | 1975818..1977251 | - | 1434 | WP_012967754.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219295 NZ_CP084765:1972665-1972767 [Klebsiella variicola subsp. variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT219295 NZ_CP084765:c1972773-1972629 [Klebsiella variicola subsp. variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
