Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4613217..4613301 Replicon chromosome
Accession NZ_CP084740
Organism Dickeya zeae strain A586-S18-A17

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4613217..4613297 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4613217..4613301 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LHK94_RS20360 (LHK94_20365) 4608661..4610595 + 1935 WP_012884836.1 protein kinase YeaG -
LHK94_RS20365 (LHK94_20370) 4610632..4611909 + 1278 WP_033581676.1 YeaH/YhbH family protein -
LHK94_RS20370 (LHK94_20375) 4612003..4612398 - 396 WP_210182755.1 hypothetical protein -
LHK94_RS20375 (LHK94_20380) 4612709..4613047 + 339 WP_012884839.1 YebY family protein -
- 4613217..4613297 + 81 - - Toxin
- 4613217..4613301 - 85 - - Antitoxin
LHK94_RS20380 (LHK94_20385) 4614350..4615069 - 720 WP_146214213.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 4608661..4698415 89754


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T219253 NZ_CP084740:4613217-4613297 [Dickeya zeae]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 85 bp

>AT219253 NZ_CP084740:c4613301-4613217 [Dickeya zeae]
AGTTAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References