Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | BrnTA/BrnT-BrnA |
Location | 2762..3350 | Replicon | plasmid pHKU6a |
Accession | NZ_CP084725 | ||
Organism | Acinetobacter baumannii strain HKU6 |
Toxin (Protein)
Gene name | brnT | Uniprot ID | A0A3G6Z3M6 |
Locus tag | LHJ64_RS19355 | Protein ID | WP_000438826.1 |
Coordinates | 2762..3049 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | brnA | Uniprot ID | N9M5I3 |
Locus tag | LHJ64_RS19360 | Protein ID | WP_001983304.1 |
Coordinates | 3036..3350 (+) | Length | 105 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LHJ64_RS19335 (LHJ64_19335) | 1..951 | + | 951 | WP_001205343.1 | replication initiation protein RepM | - |
LHJ64_RS19340 (LHJ64_19340) | 944..1519 | + | 576 | WP_001096616.1 | plasmid replication DNA-binding protein | - |
LHJ64_RS19345 (LHJ64_19345) | 1539..1682 | + | 144 | WP_001125246.1 | hypothetical protein | - |
LHJ64_RS19350 (LHJ64_19350) | 1871..2389 | - | 519 | WP_000447193.1 | tetratricopeptide repeat protein | - |
LHJ64_RS19355 (LHJ64_19355) | 2762..3049 | + | 288 | WP_000438826.1 | BrnT family toxin | Toxin |
LHJ64_RS19360 (LHJ64_19360) | 3036..3350 | + | 315 | WP_001983304.1 | BrnA antitoxin family protein | Antitoxin |
LHJ64_RS19365 (LHJ64_19365) | 3478..5889 | + | 2412 | WP_000932953.1 | TonB-dependent receptor ZnuD2 | - |
LHJ64_RS19370 (LHJ64_19370) | 6194..6655 | + | 462 | WP_000761346.1 | DIP1984 family protein | - |
LHJ64_RS19375 (LHJ64_19375) | 6978..7151 | - | 174 | WP_001282484.1 | hypothetical protein | - |
LHJ64_RS19380 (LHJ64_19380) | 7151..7522 | - | 372 | WP_000504218.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..8731 | 8731 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11303.72 Da Isoelectric Point: 6.0889
>T219231 WP_000438826.1 NZ_CP084725:2762-3049 [Acinetobacter baumannii]
MEQYFEWDEAKNRKNQKKHDISFETASLVFEDPLRISIQDRHTNGEERWQTIGRVKGVLMLLVAHTIFDEDDCEIIRIIS
ARQVTKAERNKYEHG
MEQYFEWDEAKNRKNQKKHDISFETASLVFEDPLRISIQDRHTNGEERWQTIGRVKGVLMLLVAHTIFDEDDCEIIRIIS
ARQVTKAERNKYEHG
Download Length: 288 bp
>T219231 NZ_CP116217:c5318-5013 [Klebsiella michiganensis]
ATGCAGTTTAAGGTTTATGCCTATAAAAGAGAGAGCCGCTATCGTCTGTTCGTGGATGTGCAGAGTGACATCATCGATAC
CCCCGGGCGGCGGATGGTGATCCCGCTGGCCAGCGCCCGGCTGCTGTCGGATAAGGTCTCCCGTGAGCTCTATCCGGTGG
TGCACATCGGGGACGAGAGCTGGCGCCTGATGACCACGGACATGGCCAGCGTCCCGGCCTCCGTCACCGGGGAGGAAGTG
GCCGATCTCCGCCACCGGGAAAATGACATCAAAAACGCAATTAACCTGATGTTCTGGGGGATCTGA
ATGCAGTTTAAGGTTTATGCCTATAAAAGAGAGAGCCGCTATCGTCTGTTCGTGGATGTGCAGAGTGACATCATCGATAC
CCCCGGGCGGCGGATGGTGATCCCGCTGGCCAGCGCCCGGCTGCTGTCGGATAAGGTCTCCCGTGAGCTCTATCCGGTGG
TGCACATCGGGGACGAGAGCTGGCGCCTGATGACCACGGACATGGCCAGCGTCCCGGCCTCCGTCACCGGGGAGGAAGTG
GCCGATCTCCGCCACCGGGAAAATGACATCAAAAACGCAATTAACCTGATGTTCTGGGGGATCTGA
Antitoxin
Download Length: 105 a.a. Molecular weight: 12208.84 Da Isoelectric Point: 7.2026
>AT219231 WP_001983304.1 NZ_CP084725:3036-3350 [Acinetobacter baumannii]
MSMVRYSHKELNEKFGEKQDAEIQRLLAKGTVPDDQLDLSDIPEITDWSNAVRQNQFYRPVKQQTSIRLDADVLAWFKAQ
GKGYQTRMNEILRDAMLKELKNHQ
MSMVRYSHKELNEKFGEKQDAEIQRLLAKGTVPDDQLDLSDIPEITDWSNAVRQNQFYRPVKQQTSIRLDADVLAWFKAQ
GKGYQTRMNEILRDAMLKELKNHQ
Download Length: 315 bp
>AT219231 NZ_CP116217:c5538-5320 [Klebsiella michiganensis]
ATGAAGCAGCGCATCACCGTCACCATCGACAGCGACAGCTATCAGTTACTGAAATCCGCGGACGTCAATATCTCCGGCCT
GGTGAACAGGGCCATGCAGAATGAAGCCCGACGTCTGCGTGCCGAACGCTGGCAGGCTGAAAATCAGGAAGGGATGGCTG
AGGTTGCCCGGTTTATTGAAATGAACGGTTCATTCGCCGACGAAAACAGGGACTGGTGA
ATGAAGCAGCGCATCACCGTCACCATCGACAGCGACAGCTATCAGTTACTGAAATCCGCGGACGTCAATATCTCCGGCCT
GGTGAACAGGGCCATGCAGAATGAAGCCCGACGTCTGCGTGCCGAACGCTGGCAGGCTGAAAATCAGGAAGGGATGGCTG
AGGTTGCCCGGTTTATTGAAATGAACGGTTCATTCGCCGACGAAAACAGGGACTGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3G6Z3M6 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | N9M5I3 |