Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3162471..3162616 | Replicon | chromosome |
| Accession | NZ_CP084705 | ||
| Organism | Klebsiella pneumoniae strain KP1064WHY | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3162507..3162609 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3162471..3162616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8U55_RS15410 (K8U55_15405) | 3157601..3159661 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K8U55_RS15415 (K8U55_15410) | 3159665..3160324 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K8U55_RS15420 (K8U55_15415) | 3160403..3160633 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K8U55_RS15425 (K8U55_15420) | 3160746..3161120 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K8U55_RS15430 (K8U55_15425) | 3161124..3161993 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| K8U55_RS15435 (K8U55_15430) | 3162010..3162348 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3162471..3162616 | - | 146 | - | - | Antitoxin |
| - | 3162507..3162609 | + | 103 | - | - | Toxin |
| K8U55_RS15440 (K8U55_15435) | 3162984..3163127 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K8U55_RS15445 (K8U55_15440) | 3163232..3164200 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K8U55_RS15450 (K8U55_15445) | 3164357..3165010 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K8U55_RS15455 (K8U55_15450) | 3165007..3165198 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K8U55_RS15460 (K8U55_15455) | 3165296..3165535 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K8U55_RS15465 (K8U55_15460) | 3165653..3167087 | - | 1435 | Protein_2999 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219191 NZ_CP084705:3162507-3162609 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219191 NZ_CP084705:c3162616-3162471 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
