Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3252574..3252717 | Replicon | chromosome |
| Accession | NZ_CP084692 | ||
| Organism | Enterobacter mori strain BC01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3252609..3252712 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3252574..3252717 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6742_RS15210 (K6742_15210) | 3249057..3249719 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| K6742_RS15215 (K6742_15215) | 3249744..3250394 | - | 651 | WP_010432614.1 | carbon-nitrogen hydrolase family protein | - |
| K6742_RS15220 (K6742_15220) | 3250505..3250735 | - | 231 | WP_214593852.1 | DNA polymerase III subunit theta | - |
| K6742_RS15225 (K6742_15225) | 3250873..3251244 | + | 372 | WP_214594226.1 | CopC domain-containing protein YobA | - |
| K6742_RS15230 (K6742_15230) | 3251246..3252115 | + | 870 | WP_214593853.1 | copper homeostasis membrane protein CopD | - |
| K6742_RS15235 (K6742_15235) | 3252132..3252470 | + | 339 | WP_010432621.1 | YebY family protein | - |
| - | 3252574..3252717 | - | 144 | - | - | Antitoxin |
| - | 3252609..3252712 | + | 104 | - | - | Toxin |
| K6742_RS15240 (K6742_15240) | 3252837..3253817 | - | 981 | WP_212473603.1 | VirK/YbjX family protein | - |
| K6742_RS15245 (K6742_15245) | 3253985..3254623 | + | 639 | WP_120157996.1 | protein-serine/threonine phosphatase | - |
| K6742_RS15250 (K6742_15250) | 3254658..3254897 | - | 240 | WP_042717979.1 | YebV family protein | - |
| K6742_RS15255 (K6742_15255) | 3255002..3256444 | - | 1443 | WP_108417642.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T219160 NZ_CP084692:3252609-3252712 [Enterobacter mori]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT219160 NZ_CP084692:c3252717-3252574 [Enterobacter mori]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
