Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 870316..870587 | Replicon | chromosome |
| Accession | NZ_CP084683 | ||
| Organism | Escherichia coli strain BL21(RP) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 870446..870549 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 870316..870587 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGS58_RS04340 | 866872..867534 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| LGS58_RS04345 | 867558..868214 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LGS58_RS04350 | 868316..868546 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LGS58_RS04355 | 868685..869059 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LGS58_RS04360 | 869063..869935 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| LGS58_RS04365 | 869948..870289 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 870316..870587 | - | 272 | - | - | Antitoxin |
| - | 870446..870549 | + | 104 | - | - | Toxin |
| LGS58_RS04370 | 870684..871340 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LGS58_RS04375 | 871341..871532 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LGS58_RS04380 | 871637..871873 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LGS58_RS04385 | 871991..873430 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T219132 NZ_CP084683:870446-870549 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT219132 NZ_CP084683:c870587-870316 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
