Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3270804..3271296 Replicon chromosome
Accession NZ_CP084656
Organism Pectobacterium versatile strain SR1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LGL96_RS14530 Protein ID WP_223193489.1
Coordinates 3270804..3271055 (-) Length 84 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LGL96_RS14535 Protein ID WP_105879157.1
Coordinates 3271045..3271296 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LGL96_RS14495 (LGL96_14495) 3266308..3266790 + 483 WP_029367525.1 GNAT family N-acetyltransferase -
LGL96_RS14500 (LGL96_14500) 3266836..3267462 - 627 WP_103861356.1 LysE family transporter -
LGL96_RS14505 (LGL96_14505) 3267718..3268500 - 783 WP_205539329.1 transporter substrate-binding domain-containing protein -
LGL96_RS14510 (LGL96_14510) 3268869..3269447 - 579 WP_105879156.1 hypothetical protein -
LGL96_RS14515 (LGL96_14515) 3269665..3269841 - 177 WP_158256803.1 hypothetical protein -
LGL96_RS14520 (LGL96_14520) 3270107..3270391 - 285 WP_039539560.1 type II toxin-antitoxin system RelE/ParE family toxin -
LGL96_RS14525 (LGL96_14525) 3270381..3270632 - 252 WP_005973616.1 prevent-host-death protein -
LGL96_RS14530 (LGL96_14530) 3270804..3271055 - 252 WP_223193489.1 hypothetical protein Toxin
LGL96_RS14535 (LGL96_14535) 3271045..3271296 - 252 WP_105879157.1 prevent-host-death protein Antitoxin
LGL96_RS14540 (LGL96_14540) 3271426..3271896 + 471 WP_103861352.1 hypothetical protein -
LGL96_RS14545 (LGL96_14545) 3271896..3272225 + 330 WP_223193302.1 DUF1493 family protein -
LGL96_RS14550 (LGL96_14550) 3273099..3275591 - 2493 WP_225586038.1 SIR2 family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 84 a.a.        Molecular weight: 10011.62 Da        Isoelectric Point: 10.0265

>T219110 WP_223193489.1 NZ_CP084656:c3271055-3270804 [Pectobacterium versatile]
MSYKLEFEEHALKEFKKLRAPMWEQFTKKLKEILQNPHVPANRLHGMADCYKKFIKQPKTDYKRGQFSTRGYFVVQPIYQ
GDE

Download         Length: 252 bp

>T219110 NZ_CP116181:c4244899-4244522 [Escherichia coli]
ATGAAAACATTACCCGACACGCATGTACGGGAGGTATCGTGCTGCCCGTCTCCAGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCAGTGAACTTTCTCGTGGAAAAATACGCACTGGTACGTACCGACCTGCCGGGATTC
AGCGCCTGTACCCACTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGATCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGGAAGCATCCGGAGGCGAAACGATGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9111.41 Da        Isoelectric Point: 5.0807

>AT219110 WP_105879157.1 NZ_CP084656:c3271296-3271045 [Pectobacterium versatile]
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAMLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL

Download         Length: 252 bp

>AT219110 NZ_CP116181:c4245357-4244989 [Escherichia coli]
GTGTCAGACACACTTTCCGGGACAACGCATCCCGATGACAATGACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCCTCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References