Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-YafN |
Location | 2886596..2887121 | Replicon | chromosome |
Accession | NZ_CP084656 | ||
Organism | Pectobacterium versatile strain SR1 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | LGL96_RS12815 | Protein ID | WP_039534786.1 |
Coordinates | 2886837..2887121 (+) | Length | 95 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | C6D956 |
Locus tag | LGL96_RS12810 | Protein ID | WP_005973616.1 |
Coordinates | 2886596..2886847 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LGL96_RS12765 (LGL96_12765) | 2881604..2881828 | + | 225 | WP_225586698.1 | hypothetical protein | - |
LGL96_RS22585 | 2881948..2882151 | + | 204 | Protein_2477 | ash family protein | - |
LGL96_RS12775 (LGL96_12775) | 2882187..2882384 | + | 198 | WP_211005800.1 | host cell division inhibitor Icd-like protein | - |
LGL96_RS12780 (LGL96_12780) | 2882377..2882571 | + | 195 | WP_005973630.1 | hypothetical protein | - |
LGL96_RS12785 (LGL96_12785) | 2882568..2882834 | + | 267 | WP_116226700.1 | hypothetical protein | - |
LGL96_RS12790 (LGL96_12790) | 2882831..2883172 | + | 342 | WP_225586699.1 | DUF5375 family protein | - |
LGL96_RS12795 (LGL96_12795) | 2883183..2885510 | + | 2328 | WP_211005796.1 | phage/plasmid primase, P4 family | - |
LGL96_RS12800 (LGL96_12800) | 2885564..2886043 | - | 480 | WP_039481845.1 | GNAT family N-acetyltransferase | - |
LGL96_RS12805 (LGL96_12805) | 2886034..2886306 | - | 273 | WP_039481848.1 | DUF1778 domain-containing protein | - |
LGL96_RS12810 (LGL96_12810) | 2886596..2886847 | + | 252 | WP_005973616.1 | prevent-host-death protein | Antitoxin |
LGL96_RS12815 (LGL96_12815) | 2886837..2887121 | + | 285 | WP_039534786.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
LGL96_RS12820 (LGL96_12820) | 2887714..2889006 | + | 1293 | WP_225586700.1 | integrase arm-type DNA-binding domain-containing protein | - |
LGL96_RS12825 (LGL96_12825) | 2889405..2891042 | - | 1638 | WP_225586701.1 | DNA cytosine methyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2875351..2907965 | 32614 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 a.a. Molecular weight: 10980.93 Da Isoelectric Point: 10.1716
>T219104 WP_039534786.1 NZ_CP084656:2886837-2887121 [Pectobacterium versatile]
MSYKLEFEEHALKEFKKLGAPVREQFTKKLKEVLQNPHVPANRLHGMADCYKIKLRSAGYRLVYQVLEHEIVVLVLAVGK
RERSEVYKAAKDRL
MSYKLEFEEHALKEFKKLGAPVREQFTKKLKEVLQNPHVPANRLHGMADCYKIKLRSAGYRLVYQVLEHEIVVLVLAVGK
RERSEVYKAAKDRL
Download Length: 285 bp
>T219104 NZ_CP116181:2668891-2668998 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACAACCTGGCGGCACCGATCCTGGCGGGGATTATTACCGCAGTGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACAACCTGGCGGCACCGATCCTGGCGGGGATTATTACCGCAGTGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9079.35 Da Isoelectric Point: 5.0807
>AT219104 WP_005973616.1 NZ_CP084656:2886596-2886847 [Pectobacterium versatile]
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAVLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL
MSVQPILANAAVSISDFKKSPNAALKEANGEPVAVLTNGRISGYYVSPETWEALADYQEDIELAKIARSRMKGKRVKVDL
DEL
Download Length: 252 bp
>AT219104 NZ_CP116181:c2668834-2668779 [Escherichia coli]
CAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTC
CAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTC
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|