Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 2159062..2160502 Replicon chromosome
Accession NZ_CP084656
Organism Pectobacterium versatile strain SR1

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag LGL96_RS09480 Protein ID WP_127032189.1
Coordinates 2159062..2159949 (-) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag LGL96_RS09485 Protein ID WP_103862785.1
Coordinates 2159978..2160502 (-) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LGL96_RS09455 (LGL96_09455) 2154230..2155177 + 948 WP_103943071.1 isoaspartyl peptidase/L-asparaginase -
LGL96_RS09460 (LGL96_09460) 2155382..2156290 + 909 WP_039542502.1 LysR family transcriptional regulator -
LGL96_RS09465 (LGL96_09465) 2156389..2157252 + 864 WP_095993164.1 YicC/YloC family endoribonuclease -
LGL96_RS09470 (LGL96_09470) 2157446..2157834 + 389 Protein_1837 Arm DNA-binding domain-containing protein -
LGL96_RS09475 (LGL96_09475) 2158024..2158848 + 825 WP_039296417.1 DNA damage-inducible protein D -
LGL96_RS09480 (LGL96_09480) 2159062..2159949 - 888 WP_127032189.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
LGL96_RS09485 (LGL96_09485) 2159978..2160502 - 525 WP_103862785.1 hypothetical protein Antitoxin
LGL96_RS09490 (LGL96_09490) 2160624..2160983 + 360 Protein_1841 YicC family protein -
LGL96_RS09495 (LGL96_09495) 2161515..2161691 + 177 WP_161569432.1 hypothetical protein -
LGL96_RS09500 (LGL96_09500) 2161803..2163308 + 1506 WP_127031817.1 anti-phage dCTP deaminase -
LGL96_RS09505 (LGL96_09505) 2163648..2163965 + 318 WP_127031818.1 helix-turn-helix transcriptional regulator -
LGL96_RS09510 (LGL96_09510) 2163981..2164238 - 258 WP_039490198.1 helix-turn-helix transcriptional regulator -
LGL96_RS09515 (LGL96_09515) 2164336..2164662 + 327 WP_127031819.1 helix-turn-helix transcriptional regulator -
LGL96_RS09520 (LGL96_09520) 2164872..2165429 + 558 WP_039296437.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - rfaD 2112933..2164238 51305


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(39-265)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 33976.91 Da        Isoelectric Point: 5.9876

>T219095 WP_127032189.1 NZ_CP084656:c2159949-2159062 [Pectobacterium versatile]
MLKQQIRQIVQSTPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFQPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYNIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARQKQTENFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWAYVQGEVHAIASELLNDGAPKNPFDMG

Download         Length: 888 bp

>T219095 NZ_CP116181:292696-293223 [Escherichia coli]
ATGGATGATCTGACGATAGAGATTCTGACCGATGATGCAGATTATGATCTACAGCGATTCGACTGCGGCGAGGAAGCATT
AAATCTCTTTCTGACGACACATCTGGTTCGTCAACATCGCAATAAAATTCTGCGAGCGTATATCCTGTGTCGCAACACTC
CAGAACGTCAGGTGCTGGGATATTACACATTATCCGGCAGTTGTTTTGAACGAGCCGCACTGCCCTCGAAATCGAAACAG
AAAAAAATTCCCTACAAAAATATTCCCAGCGTAACTCTTGGGCGTCTGGCAATTGATCGTTCATTACAGGGGCAGGGATG
GGGAGCAACACTGGTTGCTCATGCCATGAAAGTTGTCTGGTCAGCCTCTTTAGCGGTAGGTATTCACGGTCTTTTTGTCG
AGGCGCTGAATGAAAAAGCCCATACGTTTTATCAGTCGCTGGGCTTTATCCCATTGGTCGGAGAAAACGAAAATGCGTTA
TTTTTCCCGACCAAATCTATAGAGCTACTTTTTACACCAGACGATTAA

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19325.45 Da        Isoelectric Point: 9.0504

>AT219095 WP_103862785.1 NZ_CP084656:c2160502-2159978 [Pectobacterium versatile]
MAKSDELLSALAKSVNAGGGIHSVAELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Download         Length: 525 bp

>AT219095 NZ_CP116181:292423-292689 [Escherichia coli]
ATGTCTGCTGTTAAAAAGCAGCGTATTGATCTGCGTTTAACTGACGATGACAAAAGTATGATTGAGGAAGCGGCAGCGAT
ATCTAATCAGTCCGTCAGCCAATTTATGTTGAACAGCGCTTCGCAGCGAGCTGCGGAAGTGATTGAACAGCATCGGCGGA
TGATTCTCACTGAGGAATCCTGGACGCGGGTGATGGATGCGCTGAGTAATCCACCGTCACCAGGTGAAAAGCTAAAACGT
GCGGCAAAACGTCTTCAGGGAATGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References