Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2066429..2066575 | Replicon | chromosome |
| Accession | NZ_CP084652 | ||
| Organism | Yersinia ruckeri strain 16Y0180 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2066433..2066526 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2066429..2066575 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL93_RS09340 (LGL93_09355) | 2062222..2062851 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LGL93_RS09345 (LGL93_09360) | 2063076..2063744 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| LGL93_RS09350 (LGL93_09365) | 2064485..2065630 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| LGL93_RS09355 (LGL93_09370) | 2065749..2066357 | + | 609 | WP_004721720.1 | tyrosine-type recombinase/integrase | - |
| - | 2066429..2066575 | + | 147 | - | - | Antitoxin |
| - | 2066433..2066526 | - | 94 | - | - | Toxin |
| LGL93_RS09360 (LGL93_09375) | 2066685..2067026 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LGL93_RS09365 (LGL93_09380) | 2067121..2068005 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LGL93_RS09370 (LGL93_09385) | 2068007..2068393 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LGL93_RS09375 (LGL93_09390) | 2068798..2069313 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LGL93_RS09380 (LGL93_09395) | 2069716..2069946 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LGL93_RS09385 (LGL93_09400) | 2070069..2071019 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T219039 NZ_CP084652:c2066526-2066433 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT219039 NZ_CP084652:2066429-2066575 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
