Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2021138..2021284 | Replicon | chromosome |
| Accession | NZ_CP084647 | ||
| Organism | Yersinia ruckeri strain 17Y0157 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2021142..2021235 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2021138..2021284 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL89_RS09095 (LGL89_09125) | 2016933..2017562 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LGL89_RS09100 (LGL89_09130) | 2017787..2018455 | + | 669 | WP_233701006.1 | hypothetical protein | - |
| LGL89_RS09105 (LGL89_09135) | 2019196..2020341 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| LGL89_RS09110 (LGL89_09140) | 2020460..2020783 | + | 324 | WP_234054668.1 | hypothetical protein | - |
| LGL89_RS09115 (LGL89_09145) | 2020755..2021066 | + | 312 | WP_234054669.1 | tyrosine-type recombinase/integrase | - |
| - | 2021138..2021284 | + | 147 | - | - | Antitoxin |
| - | 2021142..2021235 | - | 94 | - | - | Toxin |
| LGL89_RS09120 (LGL89_09150) | 2021394..2021735 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LGL89_RS09125 (LGL89_09155) | 2021830..2022714 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LGL89_RS09130 (LGL89_09160) | 2022716..2023102 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LGL89_RS09135 (LGL89_09165) | 2023507..2024022 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LGL89_RS09140 (LGL89_09170) | 2024423..2024653 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LGL89_RS09145 (LGL89_09175) | 2024776..2025726 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2009920..2027255 | 17335 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T218997 NZ_CP084647:c2021235-2021142 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT218997 NZ_CP084647:2021138-2021284 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
