Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2098545..2098691 | Replicon | chromosome |
| Accession | NZ_CP084637 | ||
| Organism | Yersinia ruckeri strain 17Y0412 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2098549..2098642 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2098545..2098691 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL85_RS09700 (LGL85_09720) | 2094351..2094980 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LGL85_RS09705 (LGL85_09725) | 2095205..2095873 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| LGL85_RS09710 (LGL85_09730) | 2096614..2097759 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| LGL85_RS09715 (LGL85_09735) | 2097878..2098483 | + | 606 | WP_096823430.1 | tyrosine-type recombinase/integrase | - |
| - | 2098545..2098691 | + | 147 | - | - | Antitoxin |
| - | 2098549..2098642 | - | 94 | - | - | Toxin |
| LGL85_RS09720 (LGL85_09740) | 2098801..2099142 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LGL85_RS09725 (LGL85_09745) | 2099237..2100121 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LGL85_RS09730 (LGL85_09750) | 2100123..2100509 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LGL85_RS09735 (LGL85_09755) | 2100914..2101429 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LGL85_RS09740 (LGL85_09760) | 2101832..2102062 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LGL85_RS09745 (LGL85_09765) | 2102185..2103135 | - | 951 | WP_234049419.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T218922 NZ_CP084637:c2098642-2098549 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT218922 NZ_CP084637:2098545-2098691 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
