Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2098586..2098732 | Replicon | chromosome |
| Accession | NZ_CP084635 | ||
| Organism | Yersinia ruckeri strain 17Y0414 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2098590..2098683 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2098586..2098732 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL86_RS09660 (LGL86_09680) | 2094392..2095021 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LGL86_RS09665 (LGL86_09685) | 2095246..2095914 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| LGL86_RS09670 (LGL86_09690) | 2096655..2097800 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| LGL86_RS09675 (LGL86_09695) | 2097919..2098524 | + | 606 | WP_096823430.1 | tyrosine-type recombinase/integrase | - |
| - | 2098586..2098732 | + | 147 | - | - | Antitoxin |
| - | 2098590..2098683 | - | 94 | - | - | Toxin |
| LGL86_RS09680 (LGL86_09700) | 2098842..2099183 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LGL86_RS09685 (LGL86_09705) | 2099278..2100162 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LGL86_RS09690 (LGL86_09710) | 2100164..2100550 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LGL86_RS09695 (LGL86_09715) | 2100955..2101470 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LGL86_RS09700 (LGL86_09720) | 2101873..2102103 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LGL86_RS09705 (LGL86_09725) | 2102226..2103176 | - | 951 | WP_234049419.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2035391..2104705 | 69314 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T218911 NZ_CP084635:c2098683-2098590 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT218911 NZ_CP084635:2098586-2098732 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
