Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yoeB-relB/YoeB-YefM |
| Location | 1877711..1878210 | Replicon | chromosome |
| Accession | NZ_CP084586 | ||
| Organism | Mycobacterium intracellulare subsp. chimaera strain 852 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A1Y0T0F0 |
| Locus tag | LFT50_RS09060 | Protein ID | WP_042911194.1 |
| Coordinates | 1877711..1877968 (-) | Length | 86 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A1Y0T5M8 |
| Locus tag | LFT50_RS09065 | Protein ID | WP_042911195.1 |
| Coordinates | 1877965..1878210 (-) | Length | 82 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 9873.43 Da Isoelectric Point: 9.9087
>T218882 WP_042911194.1 NZ_CP084586:c1877968-1877711 [Mycobacterium intracellulare subsp. chimaera]
MNIVFAPQAWDDYLHWQTADRAVLKRINKLIAEACRSPQAGIGKPEPLKYGLVGAWSRRITQEHRLVYRVVGDDLQILQA
RFHYI
MNIVFAPQAWDDYLHWQTADRAVLKRINKLIAEACRSPQAGIGKPEPLKYGLVGAWSRRITQEHRLVYRVVGDDLQILQA
RFHYI
Download Length: 258 bp
>T218882 NZ_CP116115:c3672346-3672011 [Escherichia coli]
ATGGTAAGCCGATACGTACCCGATACGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCCGG
ACATCGTCCGGCTGTTGTCCTGAGTCCGTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTCTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGA
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTGCTGATTGGGTAG
ATGGTAAGCCGATACGTACCCGATACGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCCGG
ACATCGTCCGGCTGTTGTCCTGAGTCCGTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTCTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGA
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTGCTGATTGGGTAG
Antitoxin
Download Length: 82 a.a. Molecular weight: 8947.01 Da Isoelectric Point: 4.5742
>AT218882 WP_042911195.1 NZ_CP084586:c1878210-1877965 [Mycobacterium intracellulare subsp. chimaera]
VAITASEARKNLFPLIEKVNADRTSIEITSKAGRAVLMSADDWEAWQETAYLFQSPANARRLLDAADALDRGRGIRADLD
E
VAITASEARKNLFPLIEKVNADRTSIEITSKAGRAVLMSADDWEAWQETAYLFQSPANARRLLDAADALDRGRGIRADLD
E
Download Length: 246 bp
>AT218882 NZ_CP116115:c3672594-3672346 [Escherichia coli]
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGGGAGCCGAAAGATAAGGAA
GTCTGGTAA
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGGCTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGGGAGCCGAAAGATAAGGAA
GTCTGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1Y0T0F0 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1Y0T5M8 |