Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2184203..2184371 | Replicon | chromosome |
| Accession | NZ_CP084542 | ||
| Organism | Klebsiella michiganensis strain YL9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2184261..2184364 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2184203..2184371 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LD277_RS10440 (LD277_10450) | 2179330..2181390 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| LD277_RS10445 (LD277_10455) | 2181397..2182056 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| LD277_RS10450 (LD277_10460) | 2182135..2182365 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LD277_RS10455 (LD277_10465) | 2182501..2182875 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| LD277_RS10460 (LD277_10470) | 2182880..2183749 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| LD277_RS10465 (LD277_10475) | 2183766..2184104 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2184203..2184371 | - | 169 | - | - | Antitoxin |
| - | 2184261..2184364 | + | 104 | - | - | Toxin |
| LD277_RS10470 (LD277_10480) | 2184489..2185448 | - | 960 | WP_014229836.1 | spore coat protein U domain-containing protein | - |
| LD277_RS10475 (LD277_10485) | 2185463..2187793 | - | 2331 | WP_014838820.1 | fimbria/pilus outer membrane usher protein | - |
| LD277_RS10480 (LD277_10490) | 2187796..2188560 | - | 765 | WP_014229834.1 | fimbria/pilus periplasmic chaperone | - |
| LD277_RS10485 (LD277_10495) | 2188579..2189097 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T218854 NZ_CP084542:2184261-2184364 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT218854 NZ_CP084542:c2184371-2184203 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
