Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006686..2006831 | Replicon | chromosome |
| Accession | NZ_CP084497 | ||
| Organism | Klebsiella pneumoniae strain 1632 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006722..2006824 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006686..2006831 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDL62_RS09850 (LDL62_09850) | 2001816..2003876 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LDL62_RS09855 (LDL62_09855) | 2003880..2004539 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LDL62_RS09860 (LDL62_09860) | 2004618..2004848 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LDL62_RS09865 (LDL62_09865) | 2004961..2005335 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LDL62_RS09870 (LDL62_09870) | 2005339..2006208 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LDL62_RS09875 (LDL62_09875) | 2006225..2006563 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2006686..2006831 | - | 146 | - | - | Antitoxin |
| - | 2006722..2006824 | + | 103 | - | - | Toxin |
| LDL62_RS09880 (LDL62_09880) | 2007199..2007342 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LDL62_RS09885 (LDL62_09885) | 2007447..2008415 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LDL62_RS09890 (LDL62_09890) | 2008572..2009225 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LDL62_RS09895 (LDL62_09895) | 2009222..2009413 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LDL62_RS09900 (LDL62_09900) | 2009511..2009750 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LDL62_RS09905 (LDL62_09905) | 2009866..2011299 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T218699 NZ_CP084497:2006722-2006824 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT218699 NZ_CP084497:c2006831-2006686 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
