Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1769665..1769775 | Replicon | chromosome |
| Accession | NZ_CP084433 | ||
| Organism | Edwardsiella piscicida strain S07-534 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1769672..1769773 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1769665..1769775 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DCF40_RS08220 (DCF40_08220) | 1769441..1769590 | + | 150 | WP_069578592.1 | DNA repair protein | - |
| - | 1769665..1769775 | - | 111 | - | - | Antitoxin |
| - | 1769672..1769773 | + | 102 | - | - | Toxin |
| DCF40_RS08225 (DCF40_08225) | 1770789..1771346 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| DCF40_RS08230 (DCF40_08230) | 1771434..1771793 | + | 360 | WP_012848484.1 | YcgJ family protein | - |
| DCF40_RS08235 (DCF40_08235) | 1772147..1772620 | - | 474 | WP_225857696.1 | DNA breaking-rejoining protein | - |
| DCF40_RS08240 (DCF40_08240) | 1772613..1773167 | - | 555 | WP_226088394.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| DCF40_RS08245 (DCF40_08245) | 1773178..1773456 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| DCF40_RS08250 (DCF40_08250) | 1773514..1774137 | - | 624 | WP_012848489.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1695641..1774137 | 78496 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T218625 NZ_CP084433:1769672-1769773 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT218625 NZ_CP084433:c1769775-1769665 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
