Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1676202..1676307 | Replicon | chromosome |
| Accession | NZ_CP084432 | ||
| Organism | Edwardsiella tarda strain AL98-87 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1676205..1676307 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1676202..1676307 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DCF75_RS07725 (DCF75_07725) | 1671596..1672258 | + | 663 | WP_116604778.1 | hypothetical protein | - |
| DCF75_RS07730 (DCF75_07730) | 1672264..1675074 | + | 2811 | WP_226086060.1 | tail fiber protein | - |
| DCF75_RS07735 (DCF75_07735) | 1675076..1675693 | + | 618 | WP_116604781.1 | tail fiber assembly protein | - |
| - | 1676202..1676307 | + | 106 | - | - | Antitoxin |
| - | 1676205..1676307 | - | 103 | - | - | Toxin |
| DCF75_RS07740 (DCF75_07740) | 1676552..1678123 | + | 1572 | WP_226086045.1 | cyclic diguanylate phosphodiesterase | - |
| DCF75_RS07745 (DCF75_07745) | 1678251..1678697 | + | 447 | WP_223931124.1 | YcgJ family protein | - |
| DCF75_RS07750 (DCF75_07750) | 1678805..1679530 | - | 726 | WP_047059851.1 | hypothetical protein | - |
| DCF75_RS07755 (DCF75_07755) | 1679719..1680183 | - | 465 | WP_116604785.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| DCF75_RS07760 (DCF75_07760) | 1680196..1680474 | - | 279 | WP_005286287.1 | DUF134 domain-containing protein | - |
| DCF75_RS07765 (DCF75_07765) | 1680543..1681169 | - | 627 | WP_005286281.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1624135..1678697 | 54562 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T218603 NZ_CP084432:c1676307-1676205 [Edwardsiella tarda]
GGCAAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATCGTGTCAGGTCTTTTTTT
GGCAAGGCGATCCATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCACAAGAGCCATTCCCCTAGACCTGATACA
GGAATCGTGTCAGGTCTTTTTTT
Antitoxin
Download Length: 106 bp
>AT218603 NZ_CP084432:1676202-1676307 [Edwardsiella tarda]
GATAAAAAAAGACCTGACACGATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAAAAGTTGGC
ATTATGCAGGCATGGATCGCCTTGCC
GATAAAAAAAGACCTGACACGATTCCTGTATCAGGTCTAGGGGAATGGCTCTTGTGGAGAGCCGTGCGCTAAAAGTTGGC
ATTATGCAGGCATGGATCGCCTTGCC
