Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1723108..1723218 | Replicon | chromosome |
| Accession | NZ_CP084430 | ||
| Organism | Edwardsiella piscicida strain S07-348 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1723115..1723216 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1723108..1723218 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| - | 1723108..1723218 | - | 111 | - | - | Antitoxin |
| - | 1723115..1723216 | + | 102 | - | - | Toxin |
| DCF39_RS07880 (DCF39_07885) | 1724238..1724795 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| DCF39_RS07885 (DCF39_07890) | 1724883..1725242 | + | 360 | WP_012848484.1 | YcgJ family protein | - |
| DCF39_RS07890 (DCF39_07895) | 1725269..1726078 | - | 810 | WP_015461421.1 | hypothetical protein | - |
| DCF39_RS07895 (DCF39_07900) | 1726151..1726624 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| DCF39_RS07900 (DCF39_07905) | 1726635..1726913 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| DCF39_RS07905 (DCF39_07910) | 1726971..1727594 | - | 624 | WP_015461423.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1674813..1726913 | 52100 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T218590 NZ_CP084430:1723115-1723216 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT218590 NZ_CP084430:c1723218-1723108 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
