Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1671167..1671277 | Replicon | chromosome |
| Accession | NZ_CP084427 | ||
| Organism | Edwardsiella piscicida strain S07-262 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1671174..1671275 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1671167..1671277 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DCF34_RS07610 (DCF34_07610) | 1666798..1668012 | - | 1215 | WP_015461417.1 | DUF1028 domain-containing protein | - |
| DCF34_RS07615 (DCF34_07615) | 1669055..1669351 | - | 297 | WP_012848441.1 | putative quinol monooxygenase | - |
| DCF34_RS07620 (DCF34_07620) | 1669393..1669788 | - | 396 | WP_015461418.1 | VOC family protein | - |
| DCF34_RS07625 (DCF34_07625) | 1670010..1670291 | - | 282 | WP_015461419.1 | ribbon-helix-helix domain-containing protein | - |
| DCF34_RS07630 (DCF34_07630) | 1670571..1671032 | - | 462 | WP_071840963.1 | tyrosine-type recombinase/integrase | - |
| - | 1671167..1671277 | - | 111 | - | - | Antitoxin |
| - | 1671174..1671275 | + | 102 | - | - | Toxin |
| DCF34_RS07635 (DCF34_07635) | 1672297..1672854 | + | 558 | WP_012848483.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| DCF34_RS07640 (DCF34_07640) | 1672942..1673301 | + | 360 | WP_012848484.1 | YcgJ family protein | - |
| DCF34_RS07645 (DCF34_07645) | 1673328..1674137 | - | 810 | WP_015461421.1 | hypothetical protein | - |
| DCF34_RS07650 (DCF34_07650) | 1674210..1674683 | - | 474 | WP_012848486.1 | NifB/NifX family molybdenum-iron cluster-binding protein | - |
| DCF34_RS07655 (DCF34_07655) | 1674694..1674972 | - | 279 | WP_015461422.1 | DUF134 domain-containing protein | - |
| DCF34_RS07660 (DCF34_07660) | 1675030..1675653 | - | 624 | WP_015461423.1 | response regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T218562 NZ_CP084427:1671174-1671275 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGTTAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT218562 NZ_CP084427:c1671277-1671167 [Edwardsiella piscicida]
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
ATAAAAAAAGACCTAACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAGTGCCTTGCTCTATAA
