Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2182913..2183081 | Replicon | chromosome |
| Accession | NZ_CP084415 | ||
| Organism | Klebsiella michiganensis strain YL6-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2182971..2183074 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2182913..2183081 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDP80_RS10445 (LDP80_10455) | 2178040..2180100 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| LDP80_RS10450 (LDP80_10460) | 2180107..2180766 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| LDP80_RS10455 (LDP80_10465) | 2180845..2181075 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LDP80_RS10460 (LDP80_10470) | 2181211..2181585 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| LDP80_RS10465 (LDP80_10475) | 2181590..2182459 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| LDP80_RS10470 (LDP80_10480) | 2182476..2182814 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2182913..2183081 | - | 169 | - | - | Antitoxin |
| - | 2182971..2183074 | + | 104 | - | - | Toxin |
| LDP80_RS10475 (LDP80_10485) | 2183199..2184158 | - | 960 | WP_014229836.1 | spore coat protein U domain-containing protein | - |
| LDP80_RS10480 (LDP80_10490) | 2184173..2186503 | - | 2331 | WP_014838820.1 | fimbria/pilus outer membrane usher protein | - |
| LDP80_RS10485 (LDP80_10495) | 2186506..2187270 | - | 765 | WP_014229834.1 | fimbria/pilus periplasmic chaperone | - |
| LDP80_RS10490 (LDP80_10500) | 2187289..2187807 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T218537 NZ_CP084415:2182971-2183074 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT218537 NZ_CP084415:c2183081-2182913 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
