Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 834299..834956 Replicon chromosome
Accession NZ_CP084397
Organism Klebsiella pneumoniae subsp. pneumoniae strain MRSN752019

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag KF608_RS06805 Protein ID WP_002916310.1
Coordinates 834546..834956 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag KF608_RS06800 Protein ID WP_002916312.1
Coordinates 834299..834565 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KF608_RS06775 (829455) 829455..830888 - 1434 WP_009485881.1 6-phospho-beta-glucosidase BglA -
KF608_RS06780 (831007) 831007..831735 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
KF608_RS06785 (831785) 831785..832096 + 312 WP_004144734.1 N(4)-acetylcytidine aminohydrolase -
KF608_RS06790 (832260) 832260..832919 + 660 WP_002916317.1 hemolysin III family protein -
KF608_RS06795 (833070) 833070..834053 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
KF608_RS06800 (834299) 834299..834565 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
KF608_RS06805 (834546) 834546..834956 + 411 WP_002916310.1 protein YgfX Toxin
KF608_RS06810 (834963) 834963..835484 - 522 WP_004144730.1 flavodoxin FldB -
KF608_RS06815 (835585) 835585..836481 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
KF608_RS06820 (836504) 836504..837217 + 714 WP_002916301.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
KF608_RS06825 (837223) 837223..838956 + 1734 WP_004149758.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T218493 WP_002916310.1 NZ_CP084397:834546-834956 [Klebsiella pneumoniae subsp. pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

>T218493 NZ_CP116003:c3169225-3168857 [Edwardsiella piscicida]
ATGTTTCTGCTGGGGCACGGCGCGCTGGTACTGGCGATCCTGCTGGCGCCCTGGCCGGAAAACTACAGCGTATTCTGGCT
GATTCTGCTGGTGGCGGTGATCTTTGAGTGTATCCGCAGCCAGCGCCGGATTGCGCGTAACCGCGGTGAGCTGCAGCTGC
TGGCGCCGCAGGTGTGGCACTGGCAGCTGCGCGAGTGGCGCCTGGCCCGACGCCCTTGGGTTAGCGATCTGGGGGCGCTG
CTGATCCTGCAGAGTACCCATGGTGCGCCGTGCCGCCGCCGTCTGTGGCTGGCGGCCGACAGCATGAGCCGCGAAGAGTG
GGGGCAGCTGCGCCGCACGCTGCTCGATGCGGGCGACGATCGCGCATAG

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT218493 WP_002916312.1 NZ_CP084397:834299-834565 [Klebsiella pneumoniae subsp. pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT218493 NZ_CP116003:c3169520-3169254 [Edwardsiella piscicida]
ATGGATATCAATAATAAAGCGCGGGTTCACTGGGCGTGCCGCCGCGGAATGCGCGAGCTGGATATCGCCATCATGCCTTT
CTTTGAACATGAGTATGATGCGCTTAACGATGCCGATAAACAGACCTTTGTCCGCCTGCTGGCCTGTGACGATCCTGAGC
TATTTAAATGGCTGATGAACCAGGGTAAGCCGGATGACGCCGATCTGGCCCGCATGATTACGCTGATTCAGACGCGAAAT
AAAGAACGTGGTCCTTTGGCGCTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References