Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2092229..2092323 Replicon chromosome
Accession NZ_CP084343
Organism Yersinia pestis strain 20

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2092229..2092322 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2092229..2092323 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LDH65_RS09415 (LDH65_09410) 2087801..2088751 + 951 WP_002211090.1 prolyl aminopeptidase -
LDH65_RS09420 (LDH65_09415) 2088811..2089041 - 231 WP_002211091.1 DNA polymerase III subunit theta -
LDH65_RS09425 (LDH65_09420) 2089442..2089951 + 510 WP_002211092.1 non-heme ferritin -
LDH65_RS09430 (LDH65_09425) 2090348..2090734 + 387 WP_002211093.1 CopC domain-containing protein YobA -
LDH65_RS09435 (LDH65_09430) 2090737..2091621 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
LDH65_RS09440 (LDH65_09435) 2091718..2092059 + 342 WP_002211095.1 YebY family protein -
- 2092229..2092322 + 94 - - Toxin
- 2092229..2092323 - 95 - - Antitoxin
LDH65_RS09445 (LDH65_09440) 2092582..2092908 - 327 WP_002211097.1 DUF1493 family protein -
LDH65_RS09450 (LDH65_09445) 2092902..2093360 - 459 WP_002211098.1 hypothetical protein -
LDH65_RS09455 (LDH65_09450) 2093892..2095052 + 1161 WP_002211099.1 flagellar biosynthesis protein FlhB -
LDH65_RS09460 (LDH65_09455) 2095052..2097130 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T218465 NZ_CP084343:2092229-2092322 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT218465 NZ_CP084343:c2092323-2092229 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References