Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2323765..2323859 Replicon chromosome
Accession NZ_CP084339
Organism Yersinia pestis strain 94

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2323766..2323859 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2323765..2323859 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LDH63_RS10590 (LDH63_10580) 2318958..2321036 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
LDH63_RS10595 (LDH63_10585) 2321036..2322196 - 1161 WP_002211099.1 flagellar biosynthesis protein FlhB -
LDH63_RS10600 (LDH63_10590) 2322728..2323186 + 459 WP_002211098.1 hypothetical protein -
LDH63_RS10605 (LDH63_10595) 2323180..2323506 + 327 WP_002211097.1 DUF1493 family protein -
- 2323765..2323859 + 95 - - Antitoxin
- 2323766..2323859 - 94 - - Toxin
LDH63_RS10610 (LDH63_10600) 2324029..2324370 - 342 WP_002211095.1 YebY family protein -
LDH63_RS10615 (LDH63_10605) 2324467..2325351 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
LDH63_RS10620 (LDH63_10610) 2325354..2325740 - 387 WP_002211093.1 CopC domain-containing protein YobA -
LDH63_RS10625 (LDH63_10615) 2326137..2326646 - 510 WP_002211092.1 non-heme ferritin -
LDH63_RS10630 (LDH63_10620) 2327047..2327277 + 231 WP_002211091.1 DNA polymerase III subunit theta -
LDH63_RS10635 (LDH63_10625) 2327337..2328287 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T218452 NZ_CP084339:c2323859-2323766 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT218452 NZ_CP084339:2323765-2323859 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References