Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2177879..2178019 | Replicon | chromosome |
| Accession | NZ_CP084290 | ||
| Organism | Citrobacter werkmanii strain LHC5-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2177914..2178017 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2177879..2178019 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LD024_RS10200 | 2174328..2174990 | - | 663 | WP_038641401.1 | exodeoxyribonuclease X | - |
| LD024_RS10205 | 2175013..2175669 | - | 657 | WP_150345113.1 | carbon-nitrogen hydrolase family protein | - |
| LD024_RS10210 | 2175776..2176006 | - | 231 | WP_038641397.1 | DNA polymerase III subunit theta | - |
| LD024_RS10215 | 2176150..2176524 | + | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| LD024_RS10220 | 2176528..2177400 | + | 873 | WP_227410473.1 | copper homeostasis membrane protein CopD | - |
| LD024_RS10225 | 2177421..2177759 | + | 339 | WP_038641391.1 | YebY family protein | - |
| - | 2177879..2178019 | - | 141 | - | - | Antitoxin |
| - | 2177914..2178017 | + | 104 | - | - | Toxin |
| LD024_RS10230 | 2178340..2179620 | + | 1281 | WP_227410474.1 | hypothetical protein | - |
| LD024_RS10235 | 2179694..2180335 | + | 642 | WP_137347812.1 | protein-serine/threonine phosphatase | - |
| LD024_RS10240 | 2180336..2180527 | - | 192 | WP_032939629.1 | YebW family protein | - |
| LD024_RS10245 | 2180630..2180866 | - | 237 | WP_029139506.1 | YebV family protein | - |
| LD024_RS10250 | 2180967..2182355 | - | 1389 | WP_263867724.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T218387 NZ_CP084290:2177914-2178017 [Citrobacter werkmanii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT218387 NZ_CP084290:c2178019-2177879 [Citrobacter werkmanii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
