Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | omega-epsilon-zeta/- |
| Location | 3373402..3374957 | Replicon | chromosome |
| Accession | NC_008752 | ||
| Organism | Acidovorax citrulli AAC00-1 | ||
Toxin (Protein)
| Gene name | avrRxo1 | Uniprot ID | - |
| Locus tag | AAVE_RS15320 | Protein ID | WP_011796138.1 |
| Coordinates | 3373402..3374646 (+) | Length | 415 a.a. |
Antitoxin (Protein)
| Gene name | arc1 | Uniprot ID | A1TRP1 |
| Locus tag | AAVE_RS15325 | Protein ID | WP_011796139.1 |
| Coordinates | 3374661..3374957 (+) | Length | 99 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVE_RS15305 (Aave_3059) | 3369296..3369634 | - | 339 | WP_011796135.1 | hypothetical protein | - |
| AAVE_RS15310 (Aave_3060) | 3369950..3370912 | - | 963 | WP_011796136.1 | FHA domain-containing protein | - |
| AAVE_RS15315 (Aave_3061) | 3370938..3373142 | - | 2205 | WP_041828059.1 | TOMM precursor leader peptide-binding protein | - |
| AAVE_RS15320 (Aave_3062) | 3373402..3374646 | + | 1245 | WP_011796138.1 | zeta toxin family protein | Toxin |
| AAVE_RS15325 (Aave_3063) | 3374661..3374957 | + | 297 | WP_011796139.1 | hypothetical protein | Antitoxin |
| AAVE_RS15330 (Aave_3064) | 3375116..3375979 | - | 864 | WP_011796140.1 | class I SAM-dependent methyltransferase | - |
| AAVE_RS15335 (Aave_3065) | 3375980..3376777 | - | 798 | WP_011796141.1 | BMA_0021/BMA_0022 family TOMM bacteriocin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 415 a.a. Molecular weight: 44326.94 Da Isoelectric Point: 8.6793
>T21837 WP_011796138.1 NC_008752:3373402-3374646 [Acidovorax citrulli AAC00-1]
MTDRLSRRNSANSTPRPVTSNAASISRHETPPRPTSRPVHALPAGFPAPSQRSRSSSPSRVRASLPAKVPETSGNRPAIR
LPAAPRGSDEIFGLGELPPPGQSRWDYLAHPQNWRPERRQLHDRLIGDAKTAAQDFAEVIERGGHPPTLFALRGNTAAGK
TRMATQTIPVLANALKESGGAGCINPDIFKRSLAETPEGAKLTSAQVHAESCILADRLEDELRLQKTASGAAISMLVDKR
LAGAHEIDAYIKLAQETGRKIELCDIDAPLEQSLMGVLQRKPEGDAPRPPYVAVANGFSAVRGHRLDVIDKFLSNPTLGS
YHLFGTTGNGSKAMVASVVNGELSIHDPQLYEAITDPQGARAGDSGDQIIDAALIDRLTKGIDDPARAMDARTALERYAG
MTWSDALAAHSSLT
MTDRLSRRNSANSTPRPVTSNAASISRHETPPRPTSRPVHALPAGFPAPSQRSRSSSPSRVRASLPAKVPETSGNRPAIR
LPAAPRGSDEIFGLGELPPPGQSRWDYLAHPQNWRPERRQLHDRLIGDAKTAAQDFAEVIERGGHPPTLFALRGNTAAGK
TRMATQTIPVLANALKESGGAGCINPDIFKRSLAETPEGAKLTSAQVHAESCILADRLEDELRLQKTASGAAISMLVDKR
LAGAHEIDAYIKLAQETGRKIELCDIDAPLEQSLMGVLQRKPEGDAPRPPYVAVANGFSAVRGHRLDVIDKFLSNPTLGS
YHLFGTTGNGSKAMVASVVNGELSIHDPQLYEAITDPQGARAGDSGDQIIDAALIDRLTKGIDDPARAMDARTALERYAG
MTWSDALAAHSSLT
Download Length: 1245 bp
>T21837 NC_008752:3373402-3374646 [Acidovorax citrulli AAC00-1]
ATGACAGACAGACTCAGCCGGCGAAATTCAGCGAATTCAACGCCCCGGCCCGTGACCAGCAACGCCGCTTCGATCAGCCG
GCATGAAACGCCACCGCGCCCGACCTCCCGTCCGGTGCATGCGCTGCCAGCCGGCTTCCCGGCACCATCGCAGAGATCGC
GCAGTTCATCGCCTTCACGGGTCAGGGCCTCACTGCCGGCAAAAGTGCCGGAGACATCGGGCAACAGGCCTGCGATCCGT
TTGCCGGCCGCACCCAGGGGGTCGGACGAGATCTTCGGCCTGGGGGAACTCCCTCCTCCTGGCCAGTCCCGATGGGACTA
TTTGGCCCATCCTCAAAACTGGCGCCCCGAGCGGCGTCAATTGCATGACCGGCTGATCGGCGATGCGAAAACTGCAGCCC
AGGATTTCGCCGAGGTGATCGAGCGCGGTGGCCACCCACCGACATTGTTCGCGTTGCGAGGCAATACGGCTGCGGGAAAG
ACACGCATGGCGACACAAACCATCCCCGTACTCGCCAATGCCCTCAAGGAGAGTGGCGGCGCCGGCTGTATTAATCCCGA
CATCTTCAAACGTTCGCTCGCAGAAACTCCAGAGGGAGCAAAACTTACCTCGGCGCAGGTACACGCCGAGTCGTGCATCC
TCGCTGACCGGCTTGAAGACGAACTCCGATTGCAGAAGACCGCGAGCGGCGCGGCGATCAGCATGCTGGTCGATAAGCGA
CTGGCTGGAGCGCACGAAATCGACGCGTACATCAAGCTGGCTCAGGAGACCGGTCGCAAAATCGAGTTGTGCGATATTGA
TGCTCCACTCGAGCAGTCACTCATGGGCGTGCTGCAGCGCAAGCCCGAAGGTGACGCCCCCCGGCCACCCTACGTTGCGG
TTGCCAACGGATTCTCGGCGGTTCGCGGGCACCGGCTCGATGTCATCGACAAGTTTCTCTCGAACCCGACCTTGGGGAGC
TATCATCTATTCGGCACTACCGGGAATGGCAGCAAGGCGATGGTTGCCAGCGTCGTCAACGGCGAACTGAGCATTCATGA
CCCTCAGTTATACGAGGCCATTACAGATCCCCAAGGTGCCCGGGCAGGCGATAGCGGCGATCAGATCATTGACGCTGCGC
TGATCGACCGGCTGACCAAAGGTATAGACGACCCAGCGCGAGCCATGGATGCCCGCACCGCATTGGAGCGGTACGCGGGC
ATGACGTGGTCGGACGCTCTGGCCGCCCATAGTTCACTGACTTGA
ATGACAGACAGACTCAGCCGGCGAAATTCAGCGAATTCAACGCCCCGGCCCGTGACCAGCAACGCCGCTTCGATCAGCCG
GCATGAAACGCCACCGCGCCCGACCTCCCGTCCGGTGCATGCGCTGCCAGCCGGCTTCCCGGCACCATCGCAGAGATCGC
GCAGTTCATCGCCTTCACGGGTCAGGGCCTCACTGCCGGCAAAAGTGCCGGAGACATCGGGCAACAGGCCTGCGATCCGT
TTGCCGGCCGCACCCAGGGGGTCGGACGAGATCTTCGGCCTGGGGGAACTCCCTCCTCCTGGCCAGTCCCGATGGGACTA
TTTGGCCCATCCTCAAAACTGGCGCCCCGAGCGGCGTCAATTGCATGACCGGCTGATCGGCGATGCGAAAACTGCAGCCC
AGGATTTCGCCGAGGTGATCGAGCGCGGTGGCCACCCACCGACATTGTTCGCGTTGCGAGGCAATACGGCTGCGGGAAAG
ACACGCATGGCGACACAAACCATCCCCGTACTCGCCAATGCCCTCAAGGAGAGTGGCGGCGCCGGCTGTATTAATCCCGA
CATCTTCAAACGTTCGCTCGCAGAAACTCCAGAGGGAGCAAAACTTACCTCGGCGCAGGTACACGCCGAGTCGTGCATCC
TCGCTGACCGGCTTGAAGACGAACTCCGATTGCAGAAGACCGCGAGCGGCGCGGCGATCAGCATGCTGGTCGATAAGCGA
CTGGCTGGAGCGCACGAAATCGACGCGTACATCAAGCTGGCTCAGGAGACCGGTCGCAAAATCGAGTTGTGCGATATTGA
TGCTCCACTCGAGCAGTCACTCATGGGCGTGCTGCAGCGCAAGCCCGAAGGTGACGCCCCCCGGCCACCCTACGTTGCGG
TTGCCAACGGATTCTCGGCGGTTCGCGGGCACCGGCTCGATGTCATCGACAAGTTTCTCTCGAACCCGACCTTGGGGAGC
TATCATCTATTCGGCACTACCGGGAATGGCAGCAAGGCGATGGTTGCCAGCGTCGTCAACGGCGAACTGAGCATTCATGA
CCCTCAGTTATACGAGGCCATTACAGATCCCCAAGGTGCCCGGGCAGGCGATAGCGGCGATCAGATCATTGACGCTGCGC
TGATCGACCGGCTGACCAAAGGTATAGACGACCCAGCGCGAGCCATGGATGCCCGCACCGCATTGGAGCGGTACGCGGGC
ATGACGTGGTCGGACGCTCTGGCCGCCCATAGTTCACTGACTTGA
Antitoxin
Download Length: 99 a.a. Molecular weight: 11106.62 Da Isoelectric Point: 6.9795
>AT21837 WP_011796139.1 NC_008752:3374661-3374957 [Acidovorax citrulli AAC00-1]
MTGLKGADALDFHKKLKERNAALRNAELNAAKELADKNGKEPFDLVKLERLCDTSQAGRLVEGTERQAMYEYMYYVEYKN
VGTLQDFARVVTTLASWS
MTGLKGADALDFHKKLKERNAALRNAELNAAKELADKNGKEPFDLVKLERLCDTSQAGRLVEGTERQAMYEYMYYVEYKN
VGTLQDFARVVTTLASWS
Download Length: 297 bp
>AT21837 NC_008752:3374661-3374957 [Acidovorax citrulli AAC00-1]
ATGACAGGCCTGAAAGGCGCAGATGCGCTCGACTTCCATAAGAAACTCAAGGAACGCAATGCTGCTTTACGCAATGCGGA
GTTGAACGCGGCGAAGGAACTGGCCGACAAAAATGGCAAGGAGCCTTTTGATCTCGTGAAACTGGAGAGGCTTTGCGATA
CCAGTCAAGCAGGCCGCCTTGTTGAAGGGACCGAACGGCAAGCCATGTACGAATACATGTACTACGTCGAGTACAAGAAT
GTTGGCACGTTGCAGGATTTCGCCCGGGTGGTGACAACGCTCGCGTCCTGGTCTTAA
ATGACAGGCCTGAAAGGCGCAGATGCGCTCGACTTCCATAAGAAACTCAAGGAACGCAATGCTGCTTTACGCAATGCGGA
GTTGAACGCGGCGAAGGAACTGGCCGACAAAAATGGCAAGGAGCCTTTTGATCTCGTGAAACTGGAGAGGCTTTGCGATA
CCAGTCAAGCAGGCCGCCTTGTTGAAGGGACCGAACGGCAAGCCATGTACGAATACATGTACTACGTCGAGTACAAGAAT
GTTGGCACGTTGCAGGATTTCGCCCGGGTGGTGACAACGCTCGCGTCCTGGTCTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|