Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1857359..1857504 | Replicon | chromosome |
| Accession | NZ_CP084241 | ||
| Organism | Klebsiella pneumoniae strain T877 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1857395..1857497 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1857359..1857504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDH71_RS08960 | 1852489..1854549 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LDH71_RS08965 | 1854553..1855212 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LDH71_RS08970 | 1855291..1855521 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LDH71_RS08975 | 1855634..1856008 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LDH71_RS08980 | 1856012..1856881 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LDH71_RS08985 | 1856898..1857236 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1857359..1857504 | - | 146 | - | - | Antitoxin |
| - | 1857395..1857497 | + | 103 | - | - | Toxin |
| LDH71_RS08990 | 1857872..1858015 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LDH71_RS08995 | 1858120..1859088 | - | 969 | WP_164966297.1 | VirK/YbjX family protein | - |
| LDH71_RS09000 | 1859245..1859898 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LDH71_RS09005 | 1859895..1860086 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LDH71_RS09010 | 1860184..1860423 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LDH71_RS09015 | 1860539..1861972 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T218350 NZ_CP084241:1857395-1857497 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT218350 NZ_CP084241:c1857504-1857359 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
