Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2765264..2765535 | Replicon | chromosome |
| Accession | NZ_CP084207 | ||
| Organism | Escherichia coli strain EC2648-R1-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2765394..2765497 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2765264..2765535 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB15_RS13175 | 2761819..2762481 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LDB15_RS13180 | 2762505..2763161 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LDB15_RS13185 | 2763263..2763493 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LDB15_RS13190 | 2763632..2764006 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LDB15_RS13195 | 2764010..2764882 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LDB15_RS13200 | 2764895..2765236 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2765264..2765535 | - | 272 | - | - | Antitoxin |
| - | 2765394..2765497 | + | 104 | - | - | Toxin |
| LDB15_RS13205 | 2765632..2766288 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LDB15_RS13210 | 2766289..2766480 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LDB15_RS13215 | 2766585..2766821 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LDB15_RS13220 | 2766939..2768378 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T218247 NZ_CP084207:2765394-2765497 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT218247 NZ_CP084207:c2765535-2765264 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
