Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1956123..1956394 | Replicon | chromosome |
| Accession | NZ_CP084205 | ||
| Organism | Escherichia coli strain EC2648-R1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956253..1956356 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1956123..1956394 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB14_RS09355 | 1952678..1953340 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LDB14_RS09360 | 1953364..1954020 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LDB14_RS09365 | 1954122..1954352 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LDB14_RS09370 | 1954491..1954865 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LDB14_RS09375 | 1954869..1955741 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LDB14_RS09380 | 1955754..1956095 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1956123..1956394 | - | 272 | - | - | Antitoxin |
| - | 1956253..1956356 | + | 104 | - | - | Toxin |
| LDB14_RS09385 | 1956491..1957147 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LDB14_RS09390 | 1957148..1957339 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LDB14_RS09395 | 1957444..1957680 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LDB14_RS09400 | 1957798..1959237 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T218206 NZ_CP084205:1956253-1956356 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT218206 NZ_CP084205:c1956394-1956123 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
