Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 318507..318652 | Replicon | chromosome |
| Accession | NZ_CP084168 | ||
| Organism | Klebsiella pneumoniae strain B17602 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 318514..318616 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 318507..318652 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDH50_RS01510 (LDH50_01510) | 314039..315472 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LDH50_RS01515 (LDH50_01515) | 315588..315827 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LDH50_RS01520 (LDH50_01520) | 315925..316116 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LDH50_RS01525 (LDH50_01525) | 316113..316766 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| LDH50_RS01530 (LDH50_01530) | 316923..317891 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LDH50_RS01535 (LDH50_01535) | 317996..318139 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 318507..318652 | + | 146 | - | - | Antitoxin |
| - | 318514..318616 | - | 103 | - | - | Toxin |
| LDH50_RS01540 (LDH50_01540) | 318775..319113 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LDH50_RS01545 (LDH50_01545) | 319130..319999 | - | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| LDH50_RS01550 (LDH50_01550) | 320003..320377 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LDH50_RS01555 (LDH50_01555) | 320490..320720 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LDH50_RS01560 (LDH50_01560) | 320799..321458 | + | 660 | WP_134919889.1 | exodeoxyribonuclease X | - |
| LDH50_RS01565 (LDH50_01565) | 321462..323522 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T218134 NZ_CP084168:c318616-318514 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT218134 NZ_CP084168:318507-318652 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
