Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1856221..1856366 | Replicon | chromosome |
| Accession | NZ_CP084103 | ||
| Organism | Klebsiella pneumoniae strain C11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1856257..1856359 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1856221..1856366 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8M04_RS08970 (K8M04_08960) | 1851351..1853411 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K8M04_RS08975 (K8M04_08965) | 1853415..1854074 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K8M04_RS08980 (K8M04_08970) | 1854153..1854383 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K8M04_RS08985 (K8M04_08975) | 1854496..1854870 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K8M04_RS08990 (K8M04_08980) | 1854874..1855743 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| K8M04_RS08995 (K8M04_08985) | 1855760..1856098 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1856221..1856366 | - | 146 | - | - | Antitoxin |
| - | 1856257..1856359 | + | 103 | - | - | Toxin |
| K8M04_RS09000 (K8M04_08990) | 1856735..1856878 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K8M04_RS09005 (K8M04_08995) | 1856983..1857951 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| K8M04_RS09010 (K8M04_09000) | 1858108..1858761 | + | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| K8M04_RS09015 (K8M04_09005) | 1858758..1858949 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K8M04_RS09020 (K8M04_09010) | 1859047..1859286 | - | 240 | WP_040170325.1 | YebV family protein | - |
| K8M04_RS09025 (K8M04_09015) | 1859402..1860835 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T218099 NZ_CP084103:1856257-1856359 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT218099 NZ_CP084103:c1856366-1856221 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
