Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3342663..3342934 | Replicon | chromosome |
| Accession | NZ_CP084096 | ||
| Organism | Escherichia coli O78 strain 3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3342701..3342804 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3342663..3342934 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF29_RS16015 | 3339820..3341259 | + | 1440 | WP_225343580.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LCF29_RS16020 | 3341377..3341613 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LCF29_RS16025 | 3341718..3341909 | + | 192 | WP_001313035.1 | YebW family protein | - |
| LCF29_RS16030 | 3341910..3342566 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 3342663..3342934 | + | 272 | - | - | Antitoxin |
| - | 3342701..3342804 | - | 104 | - | - | Toxin |
| LCF29_RS16035 | 3342962..3343303 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LCF29_RS16040 | 3343316..3344188 | - | 873 | WP_000879287.1 | copper homeostasis membrane protein CopD | - |
| LCF29_RS16045 | 3344192..3344566 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LCF29_RS16050 | 3344705..3344935 | + | 231 | WP_000916760.1 | DNA polymerase III subunit theta | - |
| LCF29_RS16055 | 3345037..3345693 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LCF29_RS16060 | 3345717..3346379 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T218070 NZ_CP084096:c3342804-3342701 [Escherichia coli O78]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT218070 NZ_CP084096:3342663-3342934 [Escherichia coli O78]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
