Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 927208..927479 | Replicon | chromosome |
| Accession | NZ_CP084055 | ||
| Organism | Escherichia coli strain X14-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 927246..927349 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 927208..927479 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCR13_RS04575 | 924365..925804 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LCR13_RS04580 | 925922..926158 | + | 237 | WP_001338166.1 | YebV family protein | - |
| LCR13_RS04585 | 926263..926454 | + | 192 | WP_001338167.1 | YebW family protein | - |
| LCR13_RS04590 | 926455..927111 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 927208..927479 | + | 272 | - | - | Antitoxin |
| - | 927246..927349 | - | 104 | - | - | Toxin |
| LCR13_RS04595 | 927507..927848 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LCR13_RS04600 | 927861..928733 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| LCR13_RS04605 | 928737..929111 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LCR13_RS04610 | 929250..929480 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LCR13_RS04615 | 929582..930238 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LCR13_RS04620 | 930262..930924 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T218031 NZ_CP084055:c927349-927246 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT218031 NZ_CP084055:927208-927479 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
