Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbDE/ParE-DnaT
Location 348055..348586 Replicon chromosome
Accession NZ_CP084032
Organism Pectobacterium colocasium strain LJ1

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag LCF41_RS01590 Protein ID WP_225086601.1
Coordinates 348299..348586 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name stbD Uniprot ID -
Locus tag LCF41_RS01585 Protein ID WP_180743904.1
Coordinates 348055..348309 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LCF41_RS01560 343198..343788 - 591 WP_012773024.1 DnaA initiator-associating protein DiaA -
LCF41_RS01565 343829..344185 - 357 WP_225088074.1 YraN family protein -
LCF41_RS01570 344182..346200 - 2019 WP_225086599.1 penicillin-binding protein activator -
LCF41_RS01575 346262..347149 + 888 WP_225086600.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
LCF41_RS01585 348055..348309 + 255 WP_180743904.1 plasmid stabilization protein Antitoxin
LCF41_RS01590 348299..348586 + 288 WP_225086601.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LCF41_RS01595 348765..349550 + 786 WP_225086602.1 4,5-DOPA dioxygenase extradiol -
LCF41_RS01600 349620..350780 - 1161 WP_225086603.1 glutathionylspermidine synthase family protein -
LCF41_RS01605 350791..351465 - 675 WP_180743900.1 DUF1190 family protein -
LCF41_RS01610 351735..353126 - 1392 WP_225086604.1 outer membrane channel protein TolC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-82)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10969.88 Da        Isoelectric Point: 10.7694

>T217991 WP_225086601.1 NZ_CP084032:348299-348586 [Pectobacterium colocasium]
MTYKLKFVPSAMKEWKKLGHPVREQFKKKLAERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLVQDETITVMVMGVGK
REGSQVYSDTKGRSA

Download         Length: 288 bp

>T217991 NZ_CP115151:33213-33695 [Enterobacter hormaechei subsp. xiangfangensis]
GTGGGACGTATAACCGCGCCCGAGCCGTTATCCAGCGCTCATCAGCTGGCTGAGTTCGTCAGTGGAGAGACAGTCCTCGA
TGAATGGCTAAAACAGAGAGGTTTAAAAAATCAAGCACTTGGCGCTGCCCGAACGTTCGTTGTTTGCAAGAAGGGTACGA
AGAAAGTAGCTGGTTTTTACTCTTTGGCCACCGGTAGCGTTAACCATACGGAAGCTACAGGCAGTCTTCGGCGTAACATG
CCAGATCCTATACCGGTGATTATACTCGCTCGCCTGGCGGTAGATGTCTCATTGCACGGAAAAGGGGTTGGTGCCGATTT
ACTCCACGATGCAGTTCTACGGTGTTATCGCGTAGCTGAGAACATTGGCGTTCGTGCGATAATGGTTCATGCGCTTACTG
AAGAAGCCAAAGGTTTCTATGCTCACCATGGATTTAAGGCATCACAAACTCATGAGAGGACTCTGTTTCTAAAGCTTCCA
TGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9256.44 Da        Isoelectric Point: 3.7947

>AT217991 WP_180743904.1 NZ_CP084032:348055-348309 [Pectobacterium colocasium]
MAFNILTNTAASITELKRDPMGTVRSAEGETIAILNRNEPAFYCVPPAMFAYLMELAEDAELGRTVDDRMSELADAEEIS
LDDL

Download         Length: 255 bp

>AT217991 NZ_CP115151:32959-33225 [Enterobacter hormaechei subsp. xiangfangensis]
ATGAAATCAGATGTTCAACTCAACCTAAGAGCTAAAGAGTCTCAGAGAGTACTCATCGATGCCGCTGCAGAGATCCTTCA
TAAATCGCGAACCGACTTTATCCTGGAGATGGCCTGCAAGGCTGCGGAGAATGTGATCCTTGATCGCCGTGTTTTCAATT
TTAACGACGAACAGTATGCAGAGTTCATCGATATGCTCGATGCACCAGTCGAGGATGATTCCGCCATTAATAAACTACTG
GCAAGGAAACCTCAGTGGGACGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References