Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1821766..1822037 | Replicon | chromosome |
| Accession | NZ_CP084026 | ||
| Organism | Escherichia coli strain 035053C1pKPC2_Vir_090515B1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1821896..1821999 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1821766..1822037 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC440_RS08780 | 1818321..1818983 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LC440_RS08785 | 1819007..1819663 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LC440_RS08790 | 1819765..1819995 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LC440_RS08795 | 1820134..1820508 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LC440_RS08800 | 1820512..1821384 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LC440_RS08805 | 1821397..1821738 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1821766..1822037 | - | 272 | - | - | Antitoxin |
| - | 1821896..1821999 | + | 104 | - | - | Toxin |
| LC440_RS08810 | 1822134..1822790 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LC440_RS08815 | 1822791..1822982 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LC440_RS08820 | 1823087..1823323 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LC440_RS08825 | 1823441..1824880 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217961 NZ_CP084026:1821896-1821999 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT217961 NZ_CP084026:c1822037-1821766 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
