Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1956158..1956429 | Replicon | chromosome |
| Accession | NZ_CP083990 | ||
| Organism | Escherichia coli strain EC2648-Vir2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956288..1956391 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1956158..1956429 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH23_RS09355 | 1952713..1953375 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LCH23_RS09360 | 1953399..1954055 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LCH23_RS09365 | 1954157..1954387 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LCH23_RS09370 | 1954526..1954900 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LCH23_RS09375 | 1954904..1955776 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LCH23_RS09380 | 1955789..1956130 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1956158..1956429 | - | 272 | - | - | Antitoxin |
| - | 1956288..1956391 | + | 104 | - | - | Toxin |
| LCH23_RS09385 | 1956526..1957182 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LCH23_RS09390 | 1957183..1957374 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LCH23_RS09395 | 1957479..1957715 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LCH23_RS09400 | 1957833..1959272 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217886 NZ_CP083990:1956288-1956391 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT217886 NZ_CP083990:c1956429-1956158 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
